Software

CryoFit

CryoFit is a program that fits biomolecules (protein and nucleic acids) to Cryo-EM map which is reconstructed by single particle analysis using MD simulation. A widelu used MD simulation package, Gromacs program, is integrated to one of the most popular structural biology programs, Phenix, to allow physics based refinement in a fast and user-friendly way. In the link below you can find the program and tutorial:

 https://www.phenix-online.org/documentation/reference/cryo_fit.html